LossDataSink.cpp

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//
// Class LossDataSink
//   This class writes file attributes to describe phase space of loss files
//
// Copyright (c) 200x - 2020, Paul Scherrer Institut, Villigen PSI, Switzerland
// All rights reserved
//
// This file is part of OPAL.
//
// OPAL is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// You should have received a copy of the GNU General Public License
// along with OPAL. If not, see <https://www.gnu.org/licenses/>.
//
#include "Structure/LossDataSink.h"
#include "AbstractObjects/OpalData.h"
#include "Algorithms/DistributionMoments.h"
#include "OPALconfig.h"
#include "Utilities/GeneralClassicException.h"
#include "Utilities/Options.h"
#include "Utilities/Util.h"
#include "Utility/IpplInfo.h"
 
#include <boost/filesystem.hpp>
 
#include <cmath>
 
extern Inform* gmsg;
 
#define WRITE_FILEATTRIB_STRING(attribute, value)                                                \
    {                                                                                            \
        h5_int64_t h5err = H5WriteFileAttribString(H5file_m, attribute, value);                  \
        if (h5err <= H5_ERR) {                                                                   \
            std::stringstream ss;                                                                \
            ss << "failed to write string attribute " << attribute << " to file " << fileName_m; \
            throw GeneralClassicException(std::string(__func__), ss.str());                      \
        }                                                                                        \
    }
#define WRITE_STEPATTRIB_FLOAT64(attribute, value, size)                                          \
    {                                                                                             \
        h5_int64_t h5err = H5WriteStepAttribFloat64(H5file_m, attribute, value, size);            \
        if (h5err <= H5_ERR) {                                                                    \
            std::stringstream ss;                                                                 \
            ss << "failed to write float64 attribute " << attribute << " to file " << fileName_m; \
            throw GeneralClassicException(std::string(__func__), ss.str());                       \
        }                                                                                         \
    }
#define WRITE_STEPATTRIB_INT64(attribute, value, size)                                          \
    {                                                                                           \
        h5_int64_t h5err = H5WriteStepAttribInt64(H5file_m, attribute, value, size);            \
        if (h5err <= H5_ERR) {                                                                  \
            std::stringstream ss;                                                               \
            ss << "failed to write int64 attribute " << attribute << " to file " << fileName_m; \
            throw GeneralClassicException(std::string(__func__), ss.str());                     \
        }                                                                                       \
    }
#define WRITE_DATA_FLOAT64(name, value)                                                 \
    {                                                                                   \
        h5_int64_t h5err = H5PartWriteDataFloat64(H5file_m, name, value);               \
        if (h5err <= H5_ERR) {                                                          \
            std::stringstream ss;                                                       \
            ss << "failed to write float64 data " << name << " to file " << fileName_m; \
            throw GeneralClassicException(std::string(__func__), ss.str());             \
        }                                                                               \
    }
#define WRITE_DATA_INT64(name, value)                                                 \
    {                                                                                 \
        h5_int64_t h5err = H5PartWriteDataInt64(H5file_m, name, value);               \
        if (h5err <= H5_ERR) {                                                        \
            std::stringstream ss;                                                     \
            ss << "failed to write int64 data " << name << " to file " << fileName_m; \
            throw GeneralClassicException(std::string(__func__), ss.str());           \
        }                                                                             \
    }
#define SET_STEP()                                                                \
    {                                                                             \
        h5_int64_t h5err = H5SetStep(H5file_m, H5call_m);                         \
        if (h5err <= H5_ERR) {                                                    \
            std::stringstream ss;                                                 \
            ss << "failed to set step " << H5call_m << " in file " << fileName_m; \
            throw GeneralClassicException(std::string(__func__), ss.str());       \
        }                                                                         \
    }
#define GET_NUM_STEPS()                                                     \
    {                                                                       \
        H5call_m = H5GetNumSteps(H5file_m);                                 \
        if (H5call_m <= H5_ERR) {                                           \
            std::stringstream ss;                                           \
            ss << "failed to get number of steps of file " << fileName_m;   \
            throw GeneralClassicException(std::string(__func__), ss.str()); \
        }                                                                   \
    }
#define SET_NUM_PARTICLES(num)                                                              \
    {                                                                                       \
        h5_int64_t h5err = H5PartSetNumParticles(H5file_m, num);                            \
        if (h5err <= H5_ERR) {                                                              \
            std::stringstream ss;                                                           \
            ss << "failed to set number of particles to " << num << " in step " << H5call_m \
               << " in file " << fileName_m;                                                \
            throw GeneralClassicException(std::string(__func__), ss.str());                 \
        }                                                                                   \
    }
 
#define OPEN_FILE(fname, mode, props)                                       \
    {                                                                       \
        H5file_m = H5OpenFile(fname, mode, props);                          \
        if (H5file_m == (h5_file_t)H5_ERR) {                                \
            std::stringstream ss;                                           \
            ss << "failed to open file " << fileName_m;                     \
            throw GeneralClassicException(std::string(__func__), ss.str()); \
        }                                                                   \
    }
#define CLOSE_FILE()                                                        \
    {                                                                       \
        h5_int64_t h5err = H5CloseFile(H5file_m);                           \
        if (h5err <= H5_ERR) {                                              \
            std::stringstream ss;                                           \
            ss << "failed to close file " << fileName_m;                    \
            throw GeneralClassicException(std::string(__func__), ss.str()); \
        }                                                                   \
    }
 
namespace {
    void f64transform(
        const std::vector<OpalParticle>& particles, unsigned int startIdx,
        unsigned int numParticles, h5_float64_t* buffer,
        std::function<h5_float64_t(const OpalParticle&)> select) {
        std::transform(
            particles.begin() + startIdx, particles.begin() + startIdx + numParticles, buffer,
            select);
    }
    void i64transform(
        const std::vector<OpalParticle>& particles, unsigned int startIdx,
        unsigned int numParticles, h5_int64_t* buffer,
        std::function<h5_int64_t(const OpalParticle&)> select) {
        std::transform(
            particles.begin() + startIdx, particles.begin() + startIdx + numParticles, buffer,
            select);
    }
 
    void cminmax(double& min, double& max, double val) {
        if (-val > min) {
            min = -val;
        } else if (val > max) {
            max = val;
        }
    }
}  // namespace
 
SetStatistics::SetStatistics()
    : outputName_m(""),
      spos_m(0.0),
      refTime_m(0.0),
      tmean_m(0.0),
      trms_m(0.0),
      nTotal_m(0),
      RefPartR_m(0.0),
      RefPartP_m(0.0),
      rmin_m(0.0),
      rmax_m(0.0),
      rmean_m(0.0),
      pmean_m(0.0),
      rrms_m(0.0),
      prms_m(0.0),
      rprms_m(0.0),
      normEmit_m(0.0),
      rsqsum_m(0.0),
      psqsum_m(0.0),
      rpsum_m(0.0),
      eps2_m(0.0),
      eps_norm_m(0.0),
      fac_m(0.0) {
}
 
LossDataSink::LossDataSink(std::string outfn, bool hdf5Save, CollectionType collectionType)
    : h5hut_mode_m(hdf5Save),
      H5file_m(0),
      outputName_m(outfn),
      H5call_m(0),
      collectionType_m(collectionType) {
    particles_m.clear();
    turnNumber_m.clear();
    bunchNumber_m.clear();
 
    if (h5hut_mode_m && !Options::enableHDF5) {
        throw GeneralClassicException(
            "LossDataSink::LossDataSink",
            "You must select an OPTION to save Loss data files\n"
            "Please, choose 'ENABLEHDF5=TRUE' or 'ASCIIDUMP=TRUE'");
    }
 
    OpalData::getInstance()->checkAndAddOutputFileName(outputName_m);
 
    if (OpalData::getInstance()->hasBunchAllocated()) {
        OpalData::getInstance()->setOpenMode(OpalData::OpenMode::APPEND);
    }
}
 
LossDataSink::LossDataSink(const LossDataSink& rhs)
    : h5hut_mode_m(rhs.h5hut_mode_m),
      H5file_m(rhs.H5file_m),
      outputName_m(rhs.outputName_m),
      H5call_m(rhs.H5call_m),
      RefPartR_m(rhs.RefPartR_m),
      RefPartP_m(rhs.RefPartP_m),
      globalTrackStep_m(rhs.globalTrackStep_m),
      refTime_m(rhs.refTime_m),
      spos_m(rhs.spos_m),
      collectionType_m(rhs.collectionType_m) {
    particles_m.clear();
    turnNumber_m.clear();
    bunchNumber_m.clear();
}
 
LossDataSink::~LossDataSink() noexcept(false) {
    if (H5file_m) {
        CLOSE_FILE();
        H5file_m = 0;
    }
    ippl::Comm->barrier();
}
 
void LossDataSink::openH5(h5_int32_t mode) {
    h5_prop_t props = H5CreateFileProp();
    MPI_Comm comm   = ippl::Comm->getCommunicator();
    H5SetPropFileMPIOCollective(props, &comm);
    OPEN_FILE(fileName_m.c_str(), mode, props);
    H5CloseProp(props);
}
 
void LossDataSink::writeHeaderH5() {
    // Write file attributes to describe phase space to H5 file.
    std::stringstream OPAL_version;
    OPAL_version << OPAL_PROJECT_NAME << " " << OPAL_PROJECT_VERSION << " # git rev. "
                 << Util::getGitRevision();
    WRITE_FILEATTRIB_STRING("OPAL_version", OPAL_version.str().c_str());
 
    WRITE_FILEATTRIB_STRING("SPOSUnit", "m");
    WRITE_FILEATTRIB_STRING("TIMEUnit", "s");
    WRITE_FILEATTRIB_STRING("RefPartRUnit", "m");
    WRITE_FILEATTRIB_STRING("RefPartPUnit", "#beta#gamma");
    WRITE_FILEATTRIB_STRING("GlobalTrackStepUnit", "1");
 
    WRITE_FILEATTRIB_STRING("centroidUnit", "m");
    WRITE_FILEATTRIB_STRING("RMSXUnit", "m");
    WRITE_FILEATTRIB_STRING("MEANPUnit", "#beta#gamma");
    WRITE_FILEATTRIB_STRING("RMSPUnit", "#beta#gamma");
    WRITE_FILEATTRIB_STRING("#varepsilonUnit", "m rad");
    WRITE_FILEATTRIB_STRING("#varepsilon-geomUnit", "m rad");
    WRITE_FILEATTRIB_STRING("ENERGYUnit", "MeV");
    WRITE_FILEATTRIB_STRING("dEUnit", "MeV");
    WRITE_FILEATTRIB_STRING("TotalChargeUnit", "C");
    WRITE_FILEATTRIB_STRING("TotalMassUnit", "MeV");
 
    WRITE_FILEATTRIB_STRING("idUnit", "1");
    WRITE_FILEATTRIB_STRING("xUnit", "m");
    WRITE_FILEATTRIB_STRING("yUnit", "m");
    WRITE_FILEATTRIB_STRING("zUnit", "m");
    WRITE_FILEATTRIB_STRING("pxUnit", "#beta#gamma");
    WRITE_FILEATTRIB_STRING("pyUnit", "#beta#gamma");
    WRITE_FILEATTRIB_STRING("pzUnit", "#beta#gamma");
    WRITE_FILEATTRIB_STRING("qUnit", "C");
    WRITE_FILEATTRIB_STRING("mUnit", "MeV");
 
    WRITE_FILEATTRIB_STRING("turnUnit", "1");
    WRITE_FILEATTRIB_STRING("bunchNumUnit", "1");
 
    WRITE_FILEATTRIB_STRING("timeUnit", "s");
    WRITE_FILEATTRIB_STRING("meanTimeUnit", "s");
    WRITE_FILEATTRIB_STRING("rmsTimeUnit", "s");
 
    if (Options::computePercentiles) {
        WRITE_FILEATTRIB_STRING("68-percentileUnit", "m");
        WRITE_FILEATTRIB_STRING("95-percentileUnit", "m");
        WRITE_FILEATTRIB_STRING("99-percentileUnit", "m");
        WRITE_FILEATTRIB_STRING("99_99-percentileUnit", "m");
        WRITE_FILEATTRIB_STRING("normalizedEps68PercentileUnit", "m rad");
        WRITE_FILEATTRIB_STRING("normalizedEps95PercentileUnit", "m rad");
        WRITE_FILEATTRIB_STRING("normalizedEps99PercentileUnit", "m rad");
        WRITE_FILEATTRIB_STRING("normalizedEps99_99PercentileUnit", "m rad");
    }
 
    if (collectionType_m == CollectionType::TEMPORAL) {
        WRITE_FILEATTRIB_STRING("type", "temporal");
    } else {
        WRITE_FILEATTRIB_STRING("type", "spatial");
    }
}
 
void LossDataSink::writeHeaderASCII() {
    bool hasTurn = hasTurnInformations();
    if (ippl::Comm->rank() == 0) {
        os_m << "# x (m),  y (m),  z (m),  px ( ),  py ( ),  pz ( ), id";
        if (hasTurn) {
            os_m << ",  turn ( ), bunchNumber ( )";
        }
        os_m << ", time (s)" << std::endl;
    }
}
 
void LossDataSink::addReferenceParticle(
    const Vector_t<double, 3>& x, const Vector_t<double, 3>& p, double time, double spos,
    long long globalTrackStep) {
    RefPartR_m.push_back(x);
    RefPartP_m.push_back(p);
    globalTrackStep_m.push_back((h5_int64_t)globalTrackStep);
    spos_m.push_back(spos);
    refTime_m.push_back(time);
}
 
void LossDataSink::addParticle(
    const OpalParticle& particle, const boost::optional<std::pair<int, short>>& turnBunchNumPair) {
    if (turnBunchNumPair) {
        if (!particles_m.empty() && turnNumber_m.empty()) {
            throw GeneralClassicException(
                "LossDataSink::addParticle",
                "Either no particle or all have turn number and bunch number");
        }
        turnNumber_m.push_back(turnBunchNumPair.get().first);
        bunchNumber_m.push_back(turnBunchNumPair.get().second);
    }
 
    particles_m.push_back(particle);
}
 
void LossDataSink::save(unsigned int numSets, OpalData::OpenMode openMode) {
    if (outputName_m.empty())
        return;
    if (hasNoParticlesToDump())
        return;
 
    if (openMode == OpalData::OpenMode::UNDEFINED) {
        openMode = OpalData::getInstance()->getOpenMode();
    }
 
    namespace fs = boost::filesystem;
    if (h5hut_mode_m) {
        fileName_m = outputName_m + std::string(".h5");
        if (openMode == OpalData::OpenMode::WRITE || !fs::exists(fileName_m)) {
            openH5();
            writeHeaderH5();
        } else {
            openH5(H5_O_APPENDONLY);
            GET_NUM_STEPS();
        }
 
        for (unsigned int i = 0; i < numSets; ++i) {
            saveH5(i);
        }
        CLOSE_FILE();
        H5file_m = 0;
 
    } else {
        fileName_m = outputName_m + std::string(".loss");
        if (openMode == OpalData::OpenMode::WRITE || !fs::exists(fileName_m)) {
            openASCII();
            writeHeaderASCII();
        } else {
            appendASCII();
        }
        saveASCII();
        closeASCII();
    }
    *gmsg << level2 << "Save '" << fileName_m << "'" << endl;
 
    ippl::Comm->barrier();
 
    particles_m.clear();
    turnNumber_m.clear();
    bunchNumber_m.clear();
    spos_m.clear();
    refTime_m.clear();
    RefPartR_m.clear();
    RefPartP_m.clear();
    globalTrackStep_m.clear();
}
 
// Note: This was changed to calculate the global number of dumped particles
// because there are two cases to be considered:
// 1. ALL nodes have 0 lost particles -> nothing to be done.
// 2. Some nodes have 0 lost particles, some not -> H5 can handle that but all
// nodes HAVE to participate, otherwise H5 waits endlessly for a response from
// the nodes that didn't enter the saveH5 function. -DW
bool LossDataSink::hasNoParticlesToDump() const {
    size_t nLoc = particles_m.size();
    ippl::Comm->reduce(nLoc, nLoc, 1, std::plus<size_t>());
    return nLoc == 0;
}
 
bool LossDataSink::hasTurnInformations() const {
    bool hasTurnInformation = !turnNumber_m.empty();
 
    ippl::Comm->allreduce(hasTurnInformation, 1, std::logical_or<bool>());
 
    return hasTurnInformation > 0;
}
 
void LossDataSink::saveH5(unsigned int setIdx) {
    size_t nLoc     = particles_m.size();
    size_t startIdx = 0, endIdx = nLoc;
    if (setIdx + 1 < startSet_m.size()) {
        startIdx = startSet_m[setIdx];
        endIdx   = startSet_m[setIdx + 1];
        nLoc     = endIdx - startIdx;
    }
 
    std::unique_ptr<size_t[]> locN(new size_t[ippl::Comm->size()]);
    std::unique_ptr<size_t[]> globN(new size_t[ippl::Comm->size()]);
 
    for (int i = 0; i < ippl::Comm->size(); i++) {
        globN[i] = locN[i] = 0;
    }
 
    locN[ippl::Comm->rank()] = nLoc;
 
    reduce(locN.get(), globN.get(), ippl::Comm->size(), std::plus<size_t>());
 
    DistributionMoments engine;
    engine.compute(particles_m.begin() + startIdx, particles_m.begin() + endIdx);
 
    SET_STEP();
    SET_NUM_PARTICLES(nLoc);
 
    if (setIdx < spos_m.size()) {
        WRITE_STEPATTRIB_FLOAT64("SPOS", &(spos_m[setIdx]), 1);
        WRITE_STEPATTRIB_FLOAT64("TIME", &(refTime_m[setIdx]), 1);
        WRITE_STEPATTRIB_FLOAT64("RefPartR", (h5_float64_t*)&(RefPartR_m[setIdx]), 3);
        WRITE_STEPATTRIB_FLOAT64("RefPartP", (h5_float64_t*)&(RefPartP_m[setIdx]), 3);
        WRITE_STEPATTRIB_INT64("GlobalTrackStep", &(globalTrackStep_m[setIdx]), 1);
    }
 
    Vector_t<double, 3> tmpVector;
    double tmpDouble;
    WRITE_STEPATTRIB_FLOAT64("centroid", (tmpVector = engine.getMeanPosition(), &tmpVector[0]), 3);
    WRITE_STEPATTRIB_FLOAT64(
        "RMSX", (tmpVector = engine.getStandardDeviationPosition(), &tmpVector[0]), 3);
    WRITE_STEPATTRIB_FLOAT64("MEANP", (tmpVector = engine.getMeanMomentum(), &tmpVector[0]), 3);
    WRITE_STEPATTRIB_FLOAT64(
        "RMSP", (tmpVector = engine.getStandardDeviationMomentum(), &tmpVector[0]), 3);
    WRITE_STEPATTRIB_FLOAT64(
        "#varepsilon", (tmpVector = engine.getNormalizedEmittance(), &tmpVector[0]), 3);
    WRITE_STEPATTRIB_FLOAT64(
        "#varepsilon-geom", (tmpVector = engine.getGeometricEmittance(), &tmpVector[0]), 3);
    WRITE_STEPATTRIB_FLOAT64("ENERGY", (tmpDouble = engine.getMeanKineticEnergy(), &tmpDouble), 1);
    WRITE_STEPATTRIB_FLOAT64("dE", (tmpDouble = engine.getStdKineticEnergy(), &tmpDouble), 1);
    WRITE_STEPATTRIB_FLOAT64("TotalCharge", (tmpDouble = engine.getTotalCharge(), &tmpDouble), 1);
    WRITE_STEPATTRIB_FLOAT64("TotalMass", (tmpDouble = engine.getTotalMass(), &tmpDouble), 1);
    WRITE_STEPATTRIB_FLOAT64("meanTime", (tmpDouble = engine.getMeanTime(), &tmpDouble), 1);
    WRITE_STEPATTRIB_FLOAT64("rmsTime", (tmpDouble = engine.getStdTime(), &tmpDouble), 1);
    if (Options::computePercentiles) {
        WRITE_STEPATTRIB_FLOAT64(
            "68-percentile", (tmpVector = engine.get68Percentile(), &tmpVector[0]), 3);
        WRITE_STEPATTRIB_FLOAT64(
            "95-percentile", (tmpVector = engine.get95Percentile(), &tmpVector[0]), 3);
        WRITE_STEPATTRIB_FLOAT64(
            "99-percentile", (tmpVector = engine.get99Percentile(), &tmpVector[0]), 3);
        WRITE_STEPATTRIB_FLOAT64(
            "99_99-percentile", (tmpVector = engine.get99_99Percentile(), &tmpVector[0]), 3);
 
        WRITE_STEPATTRIB_FLOAT64(
            "normalizedEps68Percentile",
            (tmpVector = engine.getNormalizedEmittance68Percentile(), &tmpVector[0]), 3);
        WRITE_STEPATTRIB_FLOAT64(
            "normalizedEps95Percentile",
            (tmpVector = engine.getNormalizedEmittance95Percentile(), &tmpVector[0]), 3);
        WRITE_STEPATTRIB_FLOAT64(
            "normalizedEps99Percentile",
            (tmpVector = engine.getNormalizedEmittance99Percentile(), &tmpVector[0]), 3);
        WRITE_STEPATTRIB_FLOAT64(
            "normalizedEps99_99Percentile",
            (tmpVector = engine.getNormalizedEmittance99_99Percentile(), &tmpVector[0]), 3);
    }
 
    WRITE_STEPATTRIB_FLOAT64("maxR", (tmpVector = engine.getMaxR(), &tmpVector[0]), 3);
 
    // Write all data
    std::vector<char> buffer(nLoc * sizeof(h5_float64_t));
    h5_float64_t* f64buffer = nLoc > 0 ? reinterpret_cast<h5_float64_t*>(&buffer[0]) : nullptr;
    h5_int64_t* i64buffer   = nLoc > 0 ? reinterpret_cast<h5_int64_t*>(&buffer[0]) : nullptr;
 
    ::i64transform(particles_m, startIdx, nLoc, i64buffer, [](const OpalParticle& particle) {
        return particle.getId();
    });
    WRITE_DATA_INT64("id", i64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getX();
    });
    WRITE_DATA_FLOAT64("x", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getY();
    });
    WRITE_DATA_FLOAT64("y", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getZ();
    });
    WRITE_DATA_FLOAT64("z", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getPx();
    });
    WRITE_DATA_FLOAT64("px", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getPy();
    });
    WRITE_DATA_FLOAT64("py", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getPz();
    });
    WRITE_DATA_FLOAT64("pz", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getCharge();
    });
    WRITE_DATA_FLOAT64("q", f64buffer);
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getMass();
    });
    WRITE_DATA_FLOAT64("m", f64buffer);
 
    if (hasTurnInformations()) {
        std::copy(
            turnNumber_m.begin() + startIdx, turnNumber_m.begin() + startIdx + nLoc, i64buffer);
        WRITE_DATA_INT64("turn", i64buffer);
 
        std::copy(
            bunchNumber_m.begin() + startIdx, bunchNumber_m.begin() + startIdx + nLoc, i64buffer);
        WRITE_DATA_INT64("bunchNumber", i64buffer);
    }
 
    ::f64transform(particles_m, startIdx, nLoc, f64buffer, [](const OpalParticle& particle) {
        return particle.getTime();
    });
    WRITE_DATA_FLOAT64("time", f64buffer);
 
    ++H5call_m;
}
 
void LossDataSink::saveASCII() {
    /*
      ASCII output
 
    int tag      = Ippl::Comm->next_tag(IPPL_APP_TAG3, IPPL_APP_CYCLE);
    bool hasTurn = hasTurnInformations();
    if (ippl::Comm->rank == 0) {
        const unsigned partCount = particles_m.size();
 
        for (unsigned i = 0; i < partCount; i++) {
            const OpalParticle& particle = particles_m[i];
            os_m << particle.getX() << "   ";
            os_m << particle.getY() << "   ";
            os_m << particle.getZ() << "   ";
            os_m << particle.getPx() << "   ";
            os_m << particle.getPy() << "   ";
            os_m << particle.getPz() << "   ";
            os_m << particle.getId() << "   ";
            if (hasTurn) {
                os_m << turnNumber_m[i] << "   ";
                os_m << bunchNumber_m[i] << "   ";
            }
            os_m << particle.getTime() << std::endl;
        }
 
        int notReceived = ippl::Comm->size() - 1;
        while (notReceived > 0) {
            unsigned dataBlocks = 0;
            int node            = COMM_ANY_NODE;
            Message* rmsg       = Ippl::Comm->receive_block(node, tag);
            if (rmsg == 0) {
                *ippl::Error << "LossDataSink: Could not receive from client nodes output." << endl;
            }
            notReceived--;
            rmsg->get(&dataBlocks);
            rmsg->get(&hasTurn);
            for (unsigned i = 0; i < dataBlocks; i++) {
                long id;
                size_t bunchNum, turn;
                double rx, ry, rz, px, py, pz, time;
 
                os_m << (rmsg->get(&rx), rx) << "   ";
                os_m << (rmsg->get(&ry), ry) << "   ";
                os_m << (rmsg->get(&rz), rz) << "   ";
                os_m << (rmsg->get(&px), px) << "   ";
                os_m << (rmsg->get(&py), py) << "   ";
                os_m << (rmsg->get(&pz), pz) << "   ";
                os_m << (rmsg->get(&id), id) << "   ";
                if (hasTurn) {
                    os_m << (rmsg->get(&turn), turn) << "   ";
                    os_m << (rmsg->get(&bunchNum), bunchNum) << "   ";
                }
                os_m << (rmsg->get(&time), time) << std::endl;
            }
            delete rmsg;
        }
    } else {
        Message* smsg          = new Message();
        const unsigned msgsize = particles_m.size();
        smsg->put(msgsize);
        smsg->put(hasTurn);
        for (unsigned i = 0; i < msgsize; i++) {
            const OpalParticle& particle = particles_m[i];
            smsg->put(particle.getX());
            smsg->put(particle.getY());
            smsg->put(particle.getZ());
            smsg->put(particle.getPx());
            smsg->put(particle.getPy());
            smsg->put(particle.getPz());
            smsg->put(particle.getId());
            if (hasTurn) {
                smsg->put(turnNumber_m[i]);
                smsg->put(bunchNumber_m[i]);
            }
            smsg->put(particle.getTime());
        }
        bool res = Ippl::Comm->send(smsg, 0, tag);
        if (!res) {
            *ippl::Error << "LossDataSink Ippl::Comm->send(smsg, 0, tag) failed " << endl;
        }
    }
    */
}
 
void LossDataSink::splitSets(unsigned int numSets) {
    if (numSets <= 1 || particles_m.size() == 0)
        return;
 
    const size_t nLoc   = particles_m.size();
    size_t avgNumPerSet = nLoc / numSets;
    std::vector<size_t> numPartsInSet(numSets, avgNumPerSet);
    for (unsigned int j = 0; j < (nLoc - numSets * avgNumPerSet); ++j) {
        ++numPartsInSet[j];
    }
    startSet_m.resize(numSets + 1, 0);
 
    std::vector<double> data(2 * numSets, 0.0);
    double* meanT        = &data[0];
    double* numParticles = &data[numSets];
    std::vector<double> timeRange(numSets, 0.0);
    double maxT = particles_m[0].getTime();
 
    for (unsigned int iteration = 0; iteration < 2; ++iteration) {
        size_t partIdx = 0;
        for (unsigned int j = 0; j < numSets; ++j) {
            const size_t& numThisSet = numPartsInSet[j];
            for (size_t k = 0; k < numThisSet; ++k, ++partIdx) {
                meanT[j] += particles_m[partIdx].getTime();
                maxT = std::max(maxT, particles_m[partIdx].getTime());
            }
            numParticles[j] = numThisSet;
        }
 
        ippl::Comm->allreduce(&(data[0]), 2 * numSets, std::plus<double>());
 
        for (unsigned int j = 0; j < numSets; ++j) {
            meanT[j] /= numParticles[j];
        }
 
        for (unsigned int j = 0; j < numSets - 1; ++j) {
            timeRange[j] = 0.5 * (meanT[j] + meanT[j + 1]);
        }
        timeRange[numSets - 1] = maxT;
 
        std::fill(numPartsInSet.begin(), numPartsInSet.end(), 0);
 
        size_t setNum   = 0;
        size_t idxPrior = 0;
        for (size_t idx = 0; idx < nLoc; ++idx) {
            if (particles_m[idx].getTime() > timeRange[setNum]) {
                numPartsInSet[setNum] = idx - idxPrior;
                idxPrior              = idx;
                ++setNum;
            }
        }
        numPartsInSet[numSets - 1] = nLoc - idxPrior;
    }
 
    for (unsigned int i = 0; i < numSets; ++i) {
        startSet_m[i + 1] = startSet_m[i] + numPartsInSet[i];
    }
}
 
SetStatistics LossDataSink::computeSetStatistics(unsigned int setIdx) {
    SetStatistics stat;
    double part[6];
 
    const unsigned int totalSize = 45;
    double plainData[totalSize];
    double rminmax[6] = {};
 
    Util::KahanAccumulation data[totalSize];
    Util::KahanAccumulation* localCentroid = data + 1;
    Util::KahanAccumulation* localMoments  = data + 7;
    Util::KahanAccumulation* localOthers   = data + 43;
 
    size_t startIdx = 0;
    size_t nLoc     = particles_m.size();
    if (setIdx + 1 < startSet_m.size()) {
        startIdx = startSet_m[setIdx];
        nLoc     = startSet_m[setIdx + 1] - startSet_m[setIdx];
    }
 
    data[0].sum = nLoc;
 
    unsigned int idx = startIdx;
    for (unsigned long k = 0; k < nLoc; ++k, ++idx) {
        const OpalParticle& particle = particles_m[idx];
 
        part[0] = particle.getX();
        part[1] = particle.getPx();
        part[2] = particle.getY();
        part[3] = particle.getPy();
        part[4] = particle.getZ();
        part[5] = particle.getPz();
 
        for (int i = 0; i < 6; i++) {
            localCentroid[i] += part[i];
            for (int j = 0; j <= i; j++) {
                localMoments[i * 6 + j] += part[i] * part[j];
            }
        }
        localOthers[0] += particle.getTime();
        localOthers[1] += std::pow(particle.getTime(), 2);
 
        ::cminmax(rminmax[0], rminmax[1], particle.getX());
        ::cminmax(rminmax[2], rminmax[3], particle.getY());
        ::cminmax(rminmax[4], rminmax[5], particle.getZ());
    }
 
    for (int i = 0; i < 6; i++) {
        for (int j = 0; j < i; j++) {
            localMoments[j * 6 + i] = localMoments[i * 6 + j];
        }
    }
 
    for (unsigned int i = 0; i < totalSize; ++i) {
        plainData[i] = data[i].sum;
    }
 
    ippl::Comm->allreduce(plainData, totalSize, std::plus<double>());
    ippl::Comm->allreduce(rminmax, 6, std::greater<double>());
 
    if (plainData[0] == 0.0)
        return stat;
 
    double* centroid = plainData + 1;
    double* moments  = plainData + 7;
    double* others   = plainData + 43;
 
    stat.outputName_m = outputName_m;
    stat.spos_m       = spos_m[setIdx];
    stat.refTime_m    = refTime_m[setIdx];
    stat.RefPartR_m   = RefPartR_m[setIdx];
    stat.RefPartP_m   = RefPartP_m[setIdx];
    stat.nTotal_m     = (unsigned long)std::round(plainData[0]);
 
    for (unsigned int i = 0; i < 3u; i++) {
        stat.rmean_m(i) = centroid[2 * i] / stat.nTotal_m;
        stat.pmean_m(i) = centroid[(2 * i) + 1] / stat.nTotal_m;
        stat.rsqsum_m(i) =
            (moments[2 * i * 6 + 2 * i] - stat.nTotal_m * std::pow(stat.rmean_m(i), 2));
        stat.psqsum_m(i) = std::max(
            0.0,
            moments[(2 * i + 1) * 6 + (2 * i) + 1] - stat.nTotal_m * std::pow(stat.pmean_m(i), 2));
        stat.rpsum_m(i) =
            (moments[(2 * i) * 6 + (2 * i) + 1]
             - stat.nTotal_m * stat.rmean_m(i) * stat.pmean_m(i));
    }
    stat.tmean_m = others[0] / stat.nTotal_m;
    stat.trms_m = std::sqrt(std::max(0.0, (others[1] / stat.nTotal_m - std::pow(stat.tmean_m, 2))));
 
    stat.eps2_m =
        ((stat.rsqsum_m * stat.psqsum_m - stat.rpsum_m * stat.rpsum_m)
         / (1.0 * stat.nTotal_m * stat.nTotal_m));
 
    stat.rpsum_m /= stat.nTotal_m;
 
    for (unsigned int i = 0; i < 3u; i++) {
        stat.rrms_m(i)     = std::sqrt(std::max(0.0, stat.rsqsum_m(i)) / stat.nTotal_m);
        stat.prms_m(i)     = std::sqrt(std::max(0.0, stat.psqsum_m(i)) / stat.nTotal_m);
        stat.eps_norm_m(i) = std::sqrt(std::max(0.0, stat.eps2_m(i)));
        double tmp         = stat.rrms_m(i) * stat.prms_m(i);
        stat.fac_m(i)      = (tmp == 0) ? 0.0 : 1.0 / tmp;
        stat.rmin_m(i)     = -rminmax[2 * i];
        stat.rmax_m(i)     = rminmax[2 * i + 1];
    }
 
    stat.rprms_m = stat.rpsum_m * stat.fac_m;
 
    return stat;
}