OPAL (Object Oriented Parallel Accelerator Library) 2024.2
OPAL
Public Member Functions | Protected Member Functions | Static Protected Member Functions | Protected Attributes | Static Protected Attributes | Private Member Functions | Private Attributes | List of all members
H5PartWrapperForPC Class Reference

#include <H5PartWrapperForPC.h>

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Public Member Functions

 H5PartWrapperForPC (const std::string &fileName, h5_int32_t flags=H5_O_WRONLY)
 
 H5PartWrapperForPC (const std::string &fileName, int restartStep, std::string sourceFile, h5_int32_t flags=H5_O_RDWR)
 
virtual ~H5PartWrapperForPC ()
 
virtual void readHeader ()
 
virtual void readStep (PartBunchBase< double, 3 > *, h5_ssize_t firstParticle, h5_ssize_t lastParticle)
 
virtual void writeHeader ()
 
virtual void writeStep (PartBunchBase< double, 3 > *, const std::map< std::string, double > &additionalStepAttributes)
 
virtual bool predecessorIsSameFlavour () const
 
bool getPreviousH5Local () const
 
double getReferenceR () const
 
double getReferenceT () const
 
double getReferenceZ () const
 
double getReferencePr () const
 
double getReferencePt () const
 
double getReferencePz () const
 
double getMeanKineticEnergy () const
 
double getMeanMomentum () const
 
double getAzimuth () const
 
double getElevation () const
 
void close ()
 
double getLastPosition ()
 
void storeCavityInformation ()
 
size_t getNumParticles () const
 

Protected Member Functions

void open (h5_int32_t flags)
 
void copyFile (const std::string &sourceFile, int lastStep=-1, h5_int32_t flags=H5_O_WRONLY)
 
void copyFileSystem (const std::string &sourceFile)
 
void copyHeader (h5_file_t source)
 
void copyStep (h5_file_t source, int step)
 
void copyStepHeader (h5_file_t source)
 
void copyStepData (h5_file_t source)
 
void sendFailureMessage (bool failed, const std::string &where, const std::string &what)
 
void receiveFailureMessage (int sourceNode, const std::string &where, const std::string &what)
 

Static Protected Member Functions

static void reportOnError (h5_int64_t rc, const char *file, int line)
 

Protected Attributes

h5_file_t file_m
 
std::string fileName_m
 
std::string predecessorOPALFlavour_m
 
h5_int64_t numSteps_m
 
bool startedFromExistingFile_m
 

Static Protected Attributes

static std::string copyFilePrefix_m = ".copy"
 

Private Member Functions

void readStepHeader (PartBunchBase< double, 3 > *)
 
void readStepData (PartBunchBase< double, 3 > *, h5_ssize_t, h5_ssize_t)
 
void writeStepHeader (PartBunchBase< double, 3 > *, const std::map< std::string, double > &)
 
void writeStepData (PartBunchBase< double, 3 > *)
 

Private Attributes

bool previousH5Local_m
 
Vector_t referenceMomentum_m
 
Vector_t referenceLocation_m
 
h5_float64_t meanE_m
 
h5_float64_t meanMomentum_m
 
h5_float64_t azimuth_m
 
h5_float64_t elevation_m
 

Detailed Description

H5PartWrapperForPC: a class that manages calls to H5Part for the cyclotron tracker

Definition at line 14 of file H5PartWrapperForPC.h.

Constructor & Destructor Documentation

◆ H5PartWrapperForPC() [1/2]

H5PartWrapperForPC::H5PartWrapperForPC ( const std::string &  fileName,
h5_int32_t  flags = H5_O_WRONLY 
)

Definition at line 18 of file H5PartWrapperForPC.cpp.

◆ H5PartWrapperForPC() [2/2]

H5PartWrapperForPC::H5PartWrapperForPC ( const std::string &  fileName,
int  restartStep,
std::string  sourceFile,
h5_int32_t  flags = H5_O_RDWR 
)

Definition at line 29 of file H5PartWrapperForPC.cpp.

◆ ~H5PartWrapperForPC()

H5PartWrapperForPC::~H5PartWrapperForPC ( )
virtual

Definition at line 43 of file H5PartWrapperForPC.cpp.

Member Function Documentation

◆ close()

void H5PartWrapper::close ( )
inherited

Definition at line 61 of file H5PartWrapper.cpp.

References Communicate::barrier(), IpplInfo::Comm, H5PartWrapper::file_m, and REPORTONERROR.

Referenced by H5Writer::close(), H5PartWrapper::copyFile(), H5Writer::H5Writer(), H5PartWrapper::open(), MultiBunchHandler::readBunch(), MultiBunchHandler::saveBunch(), H5PartWrapper::storeCavityInformation(), writeStep(), H5PartWrapperForPT::writeStep(), and H5PartWrapper::~H5PartWrapper().

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◆ copyFile()

void H5PartWrapper::copyFile ( const std::string &  sourceFile,
int  lastStep = -1,
h5_int32_t  flags = H5_O_WRONLY 
)
protectedinherited

Definition at line 128 of file H5PartWrapper.cpp.

References Communicate::barrier(), H5PartWrapper::close(), IpplInfo::Comm, H5PartWrapper::copyFilePrefix_m, H5PartWrapper::copyFileSystem(), H5PartWrapper::copyHeader(), H5PartWrapper::copyStep(), H5PartWrapper::fileName_m, Hypervolume::fs, IpplInfo::getComm(), IpplInfo::myNode(), H5PartWrapper::numSteps_m, H5PartWrapper::open(), PAssert, H5PartWrapper::predecessorOPALFlavour_m, READSTEPATTRIB, and REPORTONERROR.

Referenced by H5PartWrapper::H5PartWrapper().

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◆ copyFileSystem()

void H5PartWrapper::copyFileSystem ( const std::string &  sourceFile)
protectedinherited

Definition at line 253 of file H5PartWrapper.cpp.

References H5PartWrapper::fileName_m, IpplInfo::myNode(), H5PartWrapper::receiveFailureMessage(), and H5PartWrapper::sendFailureMessage().

Referenced by H5PartWrapper::copyFile().

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◆ copyHeader()

void H5PartWrapper::copyHeader ( h5_file_t  source)
protectedinherited

Definition at line 290 of file H5PartWrapper.cpp.

References PyOpal::PyOpalObjectNS::attributeName, H5PartWrapper::file_m, READFILEATTRIB, REPORTONERROR, WRITEFILEATTRIB, and WRITESTRINGFILEATTRIB.

Referenced by H5PartWrapper::copyFile().

◆ copyStep()

void H5PartWrapper::copyStep ( h5_file_t  source,
int  step 
)
protectedinherited

Definition at line 360 of file H5PartWrapper.cpp.

References H5PartWrapper::copyStepData(), H5PartWrapper::copyStepHeader(), H5PartWrapper::file_m, H5PartWrapper::numSteps_m, and REPORTONERROR.

Referenced by H5PartWrapper::copyFile().

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◆ copyStepData()

void H5PartWrapper::copyStepData ( h5_file_t  source)
protectedinherited

Definition at line 445 of file H5PartWrapper.cpp.

References Util::c_data(), H5PartWrapper::file_m, IpplInfo::getNodes(), IpplInfo::myNode(), READDATA, REPORTONERROR, and WRITEDATA.

Referenced by H5PartWrapper::copyStep().

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◆ copyStepHeader()

void H5PartWrapper::copyStepHeader ( h5_file_t  source)
protectedinherited

Definition at line 371 of file H5PartWrapper.cpp.

References PyOpal::PyOpalObjectNS::attributeName, H5PartWrapper::file_m, H5PartWrapper::predecessorOPALFlavour_m, READSTEPATTRIB, REPORTONERROR, WRITESTEPATTRIB, and WRITESTRINGSTEPATTRIB.

Referenced by H5PartWrapper::copyStep().

◆ getAzimuth()

double H5PartWrapperForPC::getAzimuth ( ) const
inline

Definition at line 106 of file H5PartWrapperForPC.h.

References azimuth_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getElevation()

double H5PartWrapperForPC::getElevation ( ) const
inline

Definition at line 111 of file H5PartWrapperForPC.h.

References elevation_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getLastPosition()

double H5PartWrapper::getLastPosition ( )
inlineinherited

Definition at line 89 of file H5PartWrapper.h.

References H5PartWrapper::file_m, H5PartWrapper::open(), H5PartWrapper::readStep(), READSTEPATTRIB, and REPORTONERROR.

Referenced by H5Writer::getLastPosition().

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◆ getMeanKineticEnergy()

double H5PartWrapperForPC::getMeanKineticEnergy ( ) const
inline

Definition at line 96 of file H5PartWrapperForPC.h.

References meanE_m.

◆ getMeanMomentum()

double H5PartWrapperForPC::getMeanMomentum ( ) const
inline

Definition at line 101 of file H5PartWrapperForPC.h.

References meanMomentum_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getNumParticles()

size_t H5PartWrapper::getNumParticles ( ) const
inherited

Definition at line 524 of file H5PartWrapper.cpp.

References H5PartWrapper::file_m, H5PartWrapper::numSteps_m, and REPORTONERROR.

Referenced by Distribution::doRestartOpalCycl(), Distribution::doRestartOpalT(), MultiBunchHandler::readBunch(), readStepData(), and H5PartWrapperForPT::readStepData().

◆ getPreviousH5Local()

bool H5PartWrapperForPC::getPreviousH5Local ( ) const
inline

Definition at line 61 of file H5PartWrapperForPC.h.

References previousH5Local_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getReferencePr()

double H5PartWrapperForPC::getReferencePr ( ) const
inline

Definition at line 81 of file H5PartWrapperForPC.h.

References referenceMomentum_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getReferencePt()

double H5PartWrapperForPC::getReferencePt ( ) const
inline

Definition at line 86 of file H5PartWrapperForPC.h.

References referenceMomentum_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getReferencePz()

double H5PartWrapperForPC::getReferencePz ( ) const
inline

Definition at line 91 of file H5PartWrapperForPC.h.

References referenceMomentum_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getReferenceR()

double H5PartWrapperForPC::getReferenceR ( ) const
inline

Definition at line 66 of file H5PartWrapperForPC.h.

References referenceLocation_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getReferenceT()

double H5PartWrapperForPC::getReferenceT ( ) const
inline

Definition at line 71 of file H5PartWrapperForPC.h.

References referenceLocation_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ getReferenceZ()

double H5PartWrapperForPC::getReferenceZ ( ) const
inline

Definition at line 76 of file H5PartWrapperForPC.h.

References referenceLocation_m.

Referenced by TrackRun::setupCyclotronTracker().

◆ open()

void H5PartWrapper::open ( h5_int32_t  flags)
protectedinherited

Definition at line 71 of file H5PartWrapper.cpp.

References H5PartWrapper::close(), H5PartWrapper::file_m, H5PartWrapper::fileName_m, IpplInfo::getComm(), and PAssert.

Referenced by H5PartWrapper::copyFile(), H5PartWrapper::getLastPosition(), H5PartWrapper::H5PartWrapper(), H5PartWrapper::storeCavityInformation(), writeStep(), and H5PartWrapperForPT::writeStep().

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◆ predecessorIsSameFlavour()

bool H5PartWrapperForPC::predecessorIsSameFlavour ( ) const
inlinevirtual

Implements H5PartWrapper.

Definition at line 56 of file H5PartWrapperForPC.h.

References H5PartWrapper::predecessorOPALFlavour_m.

◆ readHeader()

void H5PartWrapperForPC::readHeader ( )
virtual

Implements H5PartWrapper.

Definition at line 46 of file H5PartWrapperForPC.cpp.

References PyOpal::PyOpalObjectNS::attributeName, H5PartWrapper::file_m, OpalData::getInstance(), READFILEATTRIB, REPORTONERROR, and OpalData::setRestartDumpFreq().

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◆ readStep()

void H5PartWrapperForPC::readStep ( PartBunchBase< double, 3 > *  bunch,
h5_ssize_t  firstParticle,
h5_ssize_t  lastParticle 
)
virtual

Implements H5PartWrapper.

Definition at line 73 of file H5PartWrapperForPC.cpp.

References H5PartWrapper::file_m, readStep(), readStepData(), readStepHeader(), and REPORTONERROR.

Referenced by MultiBunchHandler::readBunch(), and readStep().

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◆ readStepData()

void H5PartWrapperForPC::readStepData ( PartBunchBase< double, 3 > *  bunch,
h5_ssize_t  firstParticle,
h5_ssize_t  lastParticle 
)
private

Definition at line 148 of file H5PartWrapperForPC.cpp.

References PartBunchBase< T, Dim >::Bin, PartBunchBase< T, Dim >::bunchNum, Util::c_data(), H5PartWrapper::file_m, PartBunchBase< T, Dim >::getNumBunch(), H5PartWrapper::getNumParticles(), PartBunchBase< T, Dim >::M, Hypervolume::n, PartBunchBase< T, Dim >::P, H5PartWrapper::predecessorOPALFlavour_m, PartBunchBase< T, Dim >::Q, PartBunchBase< T, Dim >::R, READDATA, and REPORTONERROR.

Referenced by readStep().

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◆ readStepHeader()

void H5PartWrapperForPC::readStepHeader ( PartBunchBase< double, 3 > *  bunch)
private

Definition at line 85 of file H5PartWrapperForPC.cpp.

References azimuth_m, elevation_m, endl(), ERRORMSG, Units::eV2MeV, H5PartWrapper::file_m, PartBunchBase< T, Dim >::getM(), meanE_m, meanMomentum_m, pow(), H5PartWrapper::predecessorOPALFlavour_m, previousH5Local_m, READSTEPATTRIB, referenceLocation_m, referenceMomentum_m, PartBunchBase< T, Dim >::set_sPos(), PartBunchBase< T, Dim >::setGlobalTrackStep(), PartBunchBase< T, Dim >::setLocalTrackStep(), PartBunchBase< T, Dim >::setNumBunch(), PartBunchBase< T, Dim >::setSteptoLastInj(), PartBunchBase< T, Dim >::setT(), and sqrt().

Referenced by readStep().

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◆ receiveFailureMessage()

void H5PartWrapper::receiveFailureMessage ( int  sourceNode,
const std::string &  where,
const std::string &  what 
)
protectedinherited

Definition at line 512 of file H5PartWrapper.cpp.

References IpplInfo::Comm, getMessage(), Communicate::receive_block(), and where().

Referenced by H5PartWrapper::copyFileSystem().

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◆ reportOnError()

void H5PartWrapper::reportOnError ( h5_int64_t  rc,
const char *  file,
int  line 
)
inlinestaticprotectedinherited

Definition at line 83 of file H5PartWrapper.h.

References endl(), and ERRORMSG.

Referenced by H5PartWrapperForPT::writeStepData().

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◆ sendFailureMessage()

void H5PartWrapper::sendFailureMessage ( bool  failed,
const std::string &  where,
const std::string &  what 
)
protectedinherited

Definition at line 500 of file H5PartWrapper.cpp.

References Communicate::broadcast_all(), IpplInfo::Comm, putMessage(), and where().

Referenced by H5PartWrapper::copyFileSystem().

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◆ storeCavityInformation()

void H5PartWrapper::storeCavityInformation ( )
inherited

Write number of Cavities with autophase information

Definition at line 86 of file H5PartWrapper.cpp.

References H5PartWrapper::close(), end(), endl(), H5PartWrapper::file_m, OpalData::getFirstMaxPhases(), OpalData::getInstance(), OpalData::getLastMaxPhases(), OpalData::getNumberOfMaxPhases(), INFOMSG, H5PartWrapper::open(), WRITEFILEATTRIB, and WRITESTRINGFILEATTRIB.

Referenced by H5Writer::storeCavityInformation().

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◆ writeHeader()

void H5PartWrapperForPC::writeHeader ( )
virtual

Write file dump frequency.

Implements H5PartWrapper.

Definition at line 225 of file H5PartWrapperForPC.cpp.

References Options::ebDump, H5PartWrapper::file_m, Util::getGitRevision(), Options::psDumpFreq, WRITEFILEATTRIB, and WRITESTRINGFILEATTRIB.

Referenced by MultiBunchHandler::saveBunch().

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◆ writeStep()

void H5PartWrapperForPC::writeStep ( PartBunchBase< double, 3 > *  bunch,
const std::map< std::string, double > &  additionalStepAttributes 
)
virtual

Implements H5PartWrapper.

Definition at line 311 of file H5PartWrapperForPC.cpp.

References H5PartWrapper::close(), PartBunchBase< T, Dim >::getTotalNum(), H5PartWrapper::numSteps_m, H5PartWrapper::open(), writeStepData(), and writeStepHeader().

Referenced by MultiBunchHandler::saveBunch().

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◆ writeStepData()

void H5PartWrapperForPC::writeStepData ( PartBunchBase< double, 3 > *  bunch)
private

Write space charge field map if asked for.

Need this to align particles and fields when writing space charge map.

Definition at line 464 of file H5PartWrapperForPC.cpp.

References PartBunchBase< T, Dim >::Bf, PartBunchBase< T, Dim >::Bin, PartBunchBase< T, Dim >::bunchNum, Util::c_data(), Options::ebDump, PartBunchBase< T, Dim >::Ef, H5PartWrapper::file_m, PartBunchBase< T, Dim >::get_hr(), PartBunchBase< T, Dim >::get_origin(), PartBunchBase< T, Dim >::getFieldLayout(), FieldLayout< Dim >::getLocalNDIndex(), PartBunchBase< T, Dim >::getLocalNum(), PartBunchBase< T, Dim >::getRho(), PartBunchBase< T, Dim >::hasBinning(), PartBunchBase< T, Dim >::ID, PartBunchBase< T, Dim >::M, max(), min(), PartBunchBase< T, Dim >::P, PartBunchBase< T, Dim >::Q, PartBunchBase< T, Dim >::R, REPORTONERROR, Options::rhoDump, and WRITEDATA.

Referenced by writeStep().

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◆ writeStepHeader()

void H5PartWrapperForPC::writeStepHeader ( PartBunchBase< double, 3 > *  bunch,
const std::map< std::string, double > &  additionalStepAttributes 
)
private

Write particle mass and charge per particle. (Consider making these file attributes.)

Definition at line 324 of file H5PartWrapperForPC.cpp.

References Physics::c, PartBunchBase< T, Dim >::calcBeamParameters(), endl(), Physics::epsilon_0, ERRORMSG, Units::eV2GeV, H5PartWrapper::file_m, PartBunchBase< T, Dim >::get_centroid(), PartBunchBase< T, Dim >::get_emit(), PartBunchBase< T, Dim >::get_gamma(), PartBunchBase< T, Dim >::get_maxExtent(), PartBunchBase< T, Dim >::get_meanKineticEnergy(), PartBunchBase< T, Dim >::get_norm_emit(), PartBunchBase< T, Dim >::get_origin(), PartBunchBase< T, Dim >::get_PBounds(), PartBunchBase< T, Dim >::get_pmean(), PartBunchBase< T, Dim >::get_prms(), PartBunchBase< T, Dim >::get_rmean(), PartBunchBase< T, Dim >::get_rrms(), PartBunchBase< T, Dim >::get_sPos(), PartBunchBase< T, Dim >::getCharge(), PartBunchBase< T, Dim >::getdE(), PartBunchBase< T, Dim >::getGlobalTrackStep(), PartBunchBase< T, Dim >::getLocalTrackStep(), PartBunchBase< T, Dim >::getM(), PartBunchBase< T, Dim >::getNumBunch(), PartBunchBase< T, Dim >::getQ(), PartBunchBase< T, Dim >::getSteptoLastInj(), PartBunchBase< T, Dim >::getT(), GLOBAL, H5PartWrapper::numSteps_m, Physics::pi, Options::psDumpFrame, PartBunchBase< T, Dim >::RefPartP_m, PartBunchBase< T, Dim >::RefPartR_m, REPORTONERROR, WRITESTEPATTRIB, and WRITESTRINGSTEPATTRIB.

Referenced by writeStep().

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Member Data Documentation

◆ azimuth_m

h5_float64_t H5PartWrapperForPC::azimuth_m
private

Definition at line 51 of file H5PartWrapperForPC.h.

Referenced by getAzimuth(), and readStepHeader().

◆ copyFilePrefix_m

std::string H5PartWrapper::copyFilePrefix_m = ".copy"
staticprotectedinherited

Definition at line 79 of file H5PartWrapper.h.

Referenced by H5PartWrapper::copyFile().

◆ elevation_m

h5_float64_t H5PartWrapperForPC::elevation_m
private

Definition at line 52 of file H5PartWrapperForPC.h.

Referenced by getElevation(), and readStepHeader().

◆ file_m

h5_file_t H5PartWrapper::file_m
protectedinherited

Definition at line 73 of file H5PartWrapper.h.

Referenced by H5PartWrapper::close(), H5PartWrapper::copyHeader(), H5PartWrapper::copyStep(), H5PartWrapper::copyStepData(), H5PartWrapper::copyStepHeader(), H5PartWrapper::getLastPosition(), H5PartWrapper::getNumParticles(), H5PartWrapperForPT::H5PartWrapperForPT(), H5PartWrapper::open(), readHeader(), H5PartWrapperForPT::readHeader(), readStep(), H5PartWrapperForPT::readStep(), readStepData(), H5PartWrapperForPT::readStepData(), readStepHeader(), H5PartWrapperForPT::readStepHeader(), H5PartWrapper::storeCavityInformation(), writeHeader(), H5PartWrapperForPT::writeHeader(), writeStepData(), H5PartWrapperForPT::writeStepData(), writeStepHeader(), and H5PartWrapperForPT::writeStepHeader().

◆ fileName_m

std::string H5PartWrapper::fileName_m
protectedinherited

Definition at line 74 of file H5PartWrapper.h.

Referenced by H5PartWrapper::copyFile(), H5PartWrapper::copyFileSystem(), H5PartWrapper::H5PartWrapper(), and H5PartWrapper::open().

◆ meanE_m

h5_float64_t H5PartWrapperForPC::meanE_m
private

Definition at line 49 of file H5PartWrapperForPC.h.

Referenced by getMeanKineticEnergy(), and readStepHeader().

◆ meanMomentum_m

h5_float64_t H5PartWrapperForPC::meanMomentum_m
private

Definition at line 50 of file H5PartWrapperForPC.h.

Referenced by getMeanMomentum(), and readStepHeader().

◆ numSteps_m

h5_int64_t H5PartWrapper::numSteps_m
protectedinherited

Definition at line 76 of file H5PartWrapper.h.

Referenced by H5PartWrapper::copyFile(), H5PartWrapper::copyStep(), H5PartWrapper::getNumParticles(), writeStep(), writeStepHeader(), and H5PartWrapperForPT::writeStepHeader().

◆ predecessorOPALFlavour_m

std::string H5PartWrapper::predecessorOPALFlavour_m
protectedinherited

Definition at line 75 of file H5PartWrapper.h.

Referenced by H5PartWrapper::copyFile(), H5PartWrapper::copyStepHeader(), predecessorIsSameFlavour(), H5PartWrapperForPT::predecessorIsSameFlavour(), readStepData(), and readStepHeader().

◆ previousH5Local_m

bool H5PartWrapperForPC::previousH5Local_m
private

Definition at line 46 of file H5PartWrapperForPC.h.

Referenced by getPreviousH5Local(), and readStepHeader().

◆ referenceLocation_m

Vector_t H5PartWrapperForPC::referenceLocation_m
private

Definition at line 48 of file H5PartWrapperForPC.h.

Referenced by getReferenceR(), getReferenceT(), getReferenceZ(), and readStepHeader().

◆ referenceMomentum_m

Vector_t H5PartWrapperForPC::referenceMomentum_m
private

Definition at line 47 of file H5PartWrapperForPC.h.

Referenced by getReferencePr(), getReferencePt(), getReferencePz(), and readStepHeader().

◆ startedFromExistingFile_m

bool H5PartWrapper::startedFromExistingFile_m
protectedinherited

Definition at line 77 of file H5PartWrapper.h.

The documentation for this class was generated from the following files: